Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
Chd6A3KFM7 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm6867-201ENSMUST00000219165 425 ntBASIC11.24□□□□□ -0.61
Chd6A3KFM7 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm12485-201ENSMUST00000119641 291 ntBASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm3671-201ENSMUST00000182463 1007 ntBASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Gm10179-201ENSMUST00000086233 688 ntBASIC11.24□□□□□ -0.61
Chd6A3KFM7 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd6A3KFM7 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.23□□□□□ -0.61
Chd6A3KFM7 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.23□□□□□ -0.61
Chd6A3KFM7 Ntng1-201ENSMUST00000051253 327 ntBASIC11.23□□□□□ -0.61
Chd6A3KFM7 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Gm10268-201ENSMUST00000085340 555 ntBASIC11.23□□□□□ -0.61
Chd6A3KFM7 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.23□□□□□ -0.61
Chd6A3KFM7 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd6A3KFM7 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC11.23□□□□□ -0.61
Chd6A3KFM7 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Chd6A3KFM7 Olfr286-202ENSMUST00000205305 969 ntBASIC11.22□□□□□ -0.61
Chd6A3KFM7 Gm44552-201ENSMUST00000205458 1247 ntBASIC11.22□□□□□ -0.61
Chd6A3KFM7 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Chd6A3KFM7 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
Chd6A3KFM7 AC126799.1-201ENSMUST00000221976 246 ntBASIC11.22□□□□□ -0.61
Chd6A3KFM7 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms