Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.85□□□□□ -0.03
COL8A1P27658 AC092552.1-201ENST00000547243 906 ntBASIC14.85□□□□□ -0.03
COL8A1P27658 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
COL8A1P27658 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 AC129492.6-201ENST00000611383 1305 ntBASIC14.85□□□□□ -0.03
COL8A1P27658 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 PHGDH-209ENST00000641074 1780 ntBASIC14.85□□□□□ -0.03
COL8A1P27658 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
COL8A1P27658 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.85□□□□□ -0.03
COL8A1P27658 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
COL8A1P27658 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL8A1P27658 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 AC079776.1-201ENST00000401540 1152 ntBASIC14.84□□□□□ -0.03
COL8A1P27658 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.84□□□□□ -0.03
COL8A1P27658 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.84□□□□□ -0.03
COL8A1P27658 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.84□□□□□ -0.03
COL8A1P27658 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.84□□□□□ -0.03
COL8A1P27658 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.84□□□□□ -0.03
COL8A1P27658 MIR6805-201ENST00000615055 62 ntBASIC14.84□□□□□ -0.03
COL8A1P27658 AL161645.1-201ENST00000622716 1255 ntBASIC14.84□□□□□ -0.03
COL8A1P27658 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
COL8A1P27658 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
COL8A1P27658 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL8A1P27658 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
COL8A1P27658 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL8A1P27658 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL8A1P27658 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.83□□□□□ -0.03
COL8A1P27658 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL8A1P27658 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.83□□□□□ -0.04
COL8A1P27658 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 DGCR5-201ENST00000399539 862 ntBASIC14.83□□□□□ -0.04
COL8A1P27658 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.83□□□□□ -0.04
COL8A1P27658 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL8A1P27658 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.83□□□□□ -0.04
COL8A1P27658 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.83□□□□□ -0.04
COL8A1P27658 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.83□□□□□ -0.04
COL8A1P27658 NIFKP4-201ENST00000567275 1192 ntBASIC14.83□□□□□ -0.04
COL8A1P27658 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.83□□□□□ -0.04
COL8A1P27658 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.83□□□□□ -0.04
COL8A1P27658 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.83□□□□□ -0.04
COL8A1P27658 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
COL8A1P27658 AC093010.1-201ENST00000473625 1624 ntBASIC14.83□□□□□ -0.04
COL8A1P27658 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL8A1P27658 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms