Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Ptchd3Q0EEE2 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ptchd3Q0EEE2 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Gm9727-201ENSMUST00000161387 555 ntBASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ptchd3Q0EEE2 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ptchd3Q0EEE2 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms