Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM38O00635 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM38O00635 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRIM38O00635 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 AC112482.1-201ENST00000492080 688 ntBASIC17.28■□□□□ 0.36
TRIM38O00635 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.28■□□□□ 0.36
TRIM38O00635 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM38O00635 AD001527.2-201ENST00000622994 785 ntBASIC17.28■□□□□ 0.36
TRIM38O00635 AC073592.4-201ENST00000623827 446 ntBASIC17.28■□□□□ 0.36
TRIM38O00635 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.28■□□□□ 0.36
TRIM38O00635 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM38O00635 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM38O00635 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM38O00635 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRIM38O00635 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.27■□□□□ 0.36
TRIM38O00635 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM38O00635 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
TRIM38O00635 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM38O00635 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM38O00635 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM38O00635 KRT18P27-201ENST00000427733 1299 ntBASIC17.27■□□□□ 0.36
TRIM38O00635 AC122714.2-201ENST00000502787 707 ntBASIC17.27■□□□□ 0.36
TRIM38O00635 RNA5SP416-201ENST00000516838 111 ntBASIC17.27■□□□□ 0.36
TRIM38O00635 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM38O00635 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM38O00635 AC040169.1-201ENST00000565382 521 ntBASIC17.27■□□□□ 0.36
TRIM38O00635 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM38O00635 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM38O00635 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM38O00635 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
TRIM38O00635 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.27■□□□□ 0.35
TRIM38O00635 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.27■□□□□ 0.35
TRIM38O00635 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 CROCCP2-202ENST00000412962 2773 ntBASIC17.27■□□□□ 0.35
TRIM38O00635 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 KRT8P47-201ENST00000604727 1398 ntBASIC17.27■□□□□ 0.35
TRIM38O00635 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM38O00635 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRIM38O00635 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM38O00635 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM38O00635 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.26■□□□□ 0.35
TRIM38O00635 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM38O00635 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM38O00635 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.26■□□□□ 0.35
TRIM38O00635 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms