Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 RN7SL618P-201ENST00000477850 296 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 AC016629.1-201ENST00000596579 586 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 SLC22A20-204ENST00000530038 1673 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
PRKDCP78527 HINT2P1-201ENST00000419438 481 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC12.2□□□□□ -0.46
PRKDCP78527 AC091271.1-201ENST00000611877 1162 ntBASIC12.2□□□□□ -0.46
PRKDCP78527 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
PRKDCP78527 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.2□□□□□ -0.46
PRKDCP78527 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
PRKDCP78527 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 AL589987.1-201ENST00000453380 819 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
PRKDCP78527 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.19□□□□□ -0.46
PRKDCP78527 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC12.19□□□□□ -0.46
PRKDCP78527 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.19□□□□□ -0.46
PRKDCP78527 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 SRD5A3P1-201ENST00000603021 949 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 PTGES2-AS1-201ENST00000443493 2100 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.19□□□□□ -0.46
PRKDCP78527 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 RNU1-129P-201ENST00000384064 167 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 TMEM198B-204ENST00000484016 896 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 U1.21-201ENST00000580816 167 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC12.19□□□□□ -0.46
PRKDCP78527 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 AC138627.1-207ENST00000641560 1006 ntBASIC12.19□□□□□ -0.46
PRKDCP78527 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.19□□□□□ -0.46
PRKDCP78527 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PRKDCP78527 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 KLF2P4-201ENST00000451959 1225 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.18□□□□□ -0.46
PRKDCP78527 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.18□□□□□ -0.46
PRKDCP78527 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.18□□□□□ -0.46
PRKDCP78527 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AP000997.3-201ENST00000623333 2250 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC12.18□□□□□ -0.46
PRKDCP78527 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.18□□□□□ -0.46
PRKDCP78527 RPL13AP20-201ENST00000459725 609 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 NOC2LP1-202ENST00000452600 2235 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms