Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AP000867.4-201ENST00000641616 219 ntBASIC17.78■□□□□ 0.44
NEK3P51956 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.78■□□□□ 0.44
NEK3P51956 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.78■□□□□ 0.44
NEK3P51956 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 AL356309.3-201ENST00000624132 1934 ntBASIC17.78■□□□□ 0.44
NEK3P51956 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 AC009949.1-201ENST00000623048 1830 ntBASIC17.77■□□□□ 0.44
NEK3P51956 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 AC018712.1-201ENST00000455767 687 ntBASIC17.77■□□□□ 0.44
NEK3P51956 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.77■□□□□ 0.44
NEK3P51956 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.77■□□□□ 0.44
NEK3P51956 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.77■□□□□ 0.44
NEK3P51956 AL139288.1-201ENST00000623748 933 ntBASIC17.77■□□□□ 0.44
NEK3P51956 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NEK3P51956 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NEK3P51956 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
NEK3P51956 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
NEK3P51956 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
NEK3P51956 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NEK3P51956 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.43
NEK3P51956 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NEK3P51956 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
NEK3P51956 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.77■□□□□ 0.43
NEK3P51956 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
NEK3P51956 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
NEK3P51956 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NEK3P51956 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 AL031284.1-201ENST00000419297 478 ntBASIC17.76■□□□□ 0.43
NEK3P51956 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.76■□□□□ 0.43
NEK3P51956 RNPS1P1-201ENST00000507437 918 ntBASIC17.76■□□□□ 0.43
NEK3P51956 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 SART3-203ENST00000546611 1184 ntBASIC17.76■□□□□ 0.43
NEK3P51956 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.76■□□□□ 0.43
NEK3P51956 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.76■□□□□ 0.43
NEK3P51956 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.76■□□□□ 0.43
NEK3P51956 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.76■□□□□ 0.43
NEK3P51956 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NEK3P51956 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NEK3P51956 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 AC106886.4-201ENST00000623557 2502 ntBASIC17.75■□□□□ 0.43
NEK3P51956 AGGF1P2-201ENST00000426656 2106 ntBASIC17.75■□□□□ 0.43
NEK3P51956 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NEK3P51956 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.75■□□□□ 0.43
NEK3P51956 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.75■□□□□ 0.43
NEK3P51956 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 DDX43P3-201ENST00000441064 443 ntBASIC17.75■□□□□ 0.43
NEK3P51956 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.75■□□□□ 0.43
NEK3P51956 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NEK3P51956 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.75■□□□□ 0.43
NEK3P51956 AC148477.8-201ENST00000624298 468 ntBASIC17.75■□□□□ 0.43
NEK3P51956 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
NEK3P51956 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
NEK3P51956 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.75■□□□□ 0.43
NEK3P51956 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms