Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.24■□□□□ 0.19
SOX3P41225 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.24■□□□□ 0.19
SOX3P41225 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 SCARNA2-201ENST00000458748 420 ntBASIC16.24■□□□□ 0.19
SOX3P41225 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.24■□□□□ 0.19
SOX3P41225 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
SOX3P41225 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.24■□□□□ 0.19
SOX3P41225 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 AP000867.4-201ENST00000641616 219 ntBASIC16.24■□□□□ 0.19
SOX3P41225 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.24■□□□□ 0.19
SOX3P41225 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX3P41225 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SOX3P41225 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.23■□□□□ 0.19
SOX3P41225 AL121761.2-201ENST00000598007 1648 ntBASIC16.23■□□□□ 0.19
SOX3P41225 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SOX3P41225 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 AL662844.1-201ENST00000546340 181 ntBASIC16.23■□□□□ 0.19
SOX3P41225 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.23■□□□□ 0.19
SOX3P41225 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SOX3P41225 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.23■□□□□ 0.19
SOX3P41225 AD001527.2-201ENST00000622994 785 ntBASIC16.23■□□□□ 0.19
SOX3P41225 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SOX3P41225 CROCCP2-202ENST00000412962 2773 ntBASIC16.23■□□□□ 0.19
SOX3P41225 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 AL356309.3-201ENST00000624132 1934 ntBASIC16.23■□□□□ 0.19
SOX3P41225 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SOX3P41225 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.23■□□□□ 0.19
SOX3P41225 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 PMPCAP1-201ENST00000508114 1576 ntBASIC16.22■□□□□ 0.19
SOX3P41225 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
SOX3P41225 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SOX3P41225 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms