Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rom1P32958 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rom1P32958 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rom1P32958 Tdp2-203ENSMUST00000223804 1136 ntBASIC17.37■□□□□ 0.37
Rom1P32958 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rom1P32958 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rom1P32958 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rom1P32958 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rom1P32958 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Rom1P32958 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rom1P32958 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rom1P32958 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rom1P32958 Gm22567-201ENSMUST00000175542 342 ntBASIC17.35■□□□□ 0.37
Rom1P32958 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rom1P32958 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.35■□□□□ 0.37
Rom1P32958 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rom1P32958 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rom1P32958 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rom1P32958 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rom1P32958 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Rom1P32958 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rom1P32958 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rom1P32958 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.32■□□□□ 0.36
Rom1P32958 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Rom1P32958 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
Rom1P32958 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rom1P32958 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.32■□□□□ 0.36
Rom1P32958 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Rom1P32958 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Rom1P32958 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Rom1P32958 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rom1P32958 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rom1P32958 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rom1P32958 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rom1P32958 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.3■□□□□ 0.36
Rom1P32958 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC17.29■□□□□ 0.36
Rom1P32958 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rom1P32958 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rom1P32958 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Rom1P32958 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rom1P32958 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rom1P32958 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rom1P32958 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rom1P32958 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC17.28■□□□□ 0.36
Rom1P32958 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rom1P32958 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rom1P32958 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rom1P32958 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.27■□□□□ 0.36
Rom1P32958 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rom1P32958 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rom1P32958 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Rom1P32958 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rom1P32958 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rom1P32958 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.27■□□□□ 0.35
Rom1P32958 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rom1P32958 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Rom1P32958 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rom1P32958 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rom1P32958 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.25■□□□□ 0.35
Rom1P32958 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rom1P32958 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rom1P32958 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.23■□□□□ 0.35
Rom1P32958 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rom1P32958 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
Rom1P32958 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms