Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Trim3Q9R1R2 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Trim3Q9R1R2 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm14701-201ENSMUST00000117156 348 ntBASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim3Q9R1R2 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.43□□□□□ -0.26
Trim3Q9R1R2 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms