Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 IGHV3-72-202ENST00000621503 303 ntBASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AIRN-201ENST00000601203 4374 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AC016027.1-202ENST00000607927 1699 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 RNU1-129P-201ENST00000384064 167 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 U1.21-201ENST00000580816 167 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AL132655.2-201ENST00000596276 594 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 AL031055.1-201ENST00000606362 631 ntBASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF541Q9H0D2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC138969.3-201ENST00000546612 1459 ntBASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC138932.2-201ENST00000548268 1459 ntBASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC126755.4-201ENST00000549796 1459 ntBASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC009477.1-201ENST00000452936 217 ntBASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 AC008738.7-201ENST00000609744 511 ntBASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF541Q9H0D2 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 API5-211ENST00000534695 560 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 AL606495.2-201ENST00000605867 535 ntBASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 AC018529.1-201ENST00000613063 361 ntBASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
ZNF541Q9H0D2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms