Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTCFP49711 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CTCFP49711 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CTCFP49711 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC19.95■□□□□ 0.78
CTCFP49711 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.95■□□□□ 0.78
CTCFP49711 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC19.95■□□□□ 0.78
CTCFP49711 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.95■□□□□ 0.78
CTCFP49711 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CTCFP49711 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTCFP49711 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.94■□□□□ 0.78
CTCFP49711 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CTCFP49711 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.94■□□□□ 0.78
CTCFP49711 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.94■□□□□ 0.78
CTCFP49711 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.94■□□□□ 0.78
CTCFP49711 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC19.94■□□□□ 0.78
CTCFP49711 AC099568.2-201ENST00000609194 695 ntBASIC19.94■□□□□ 0.78
CTCFP49711 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.94■□□□□ 0.78
CTCFP49711 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.94■□□□□ 0.78
CTCFP49711 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTCFP49711 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.94■□□□□ 0.78
CTCFP49711 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.93■□□□□ 0.78
CTCFP49711 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CTCFP49711 GNAS-203ENST00000306120 1878 ntBASIC19.93■□□□□ 0.78
CTCFP49711 MYLKP1-201ENST00000509077 1580 ntBASIC19.93■□□□□ 0.78
CTCFP49711 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 DGCR5-201ENST00000399539 862 ntBASIC19.93■□□□□ 0.78
CTCFP49711 MPV17-208ENST00000405076 603 ntTSL 5 BASIC19.93■□□□□ 0.78
CTCFP49711 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC19.93■□□□□ 0.78
CTCFP49711 LINC00982-205ENST00000420957 435 ntBASIC19.93■□□□□ 0.78
CTCFP49711 MIR4259-201ENST00000584466 101 ntBASIC19.93■□□□□ 0.78
CTCFP49711 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
CTCFP49711 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTCFP49711 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.93■□□□□ 0.78
CTCFP49711 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.92■□□□□ 0.78
CTCFP49711 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CTCFP49711 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CTCFP49711 AC005082.1-201ENST00000413042 2259 ntBASIC19.92■□□□□ 0.78
CTCFP49711 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CTCFP49711 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTCFP49711 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms