Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 AC004461.1-201ENST00000412461 403 ntBASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHROOM1Q2M3G4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 AC008764.6-201ENST00000595909 2069 ntBASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 ADH5P3-201ENST00000433842 1137 ntBASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 AL513210.1-201ENST00000629608 234 ntBASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHROOM1Q2M3G4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 LINC02084-201ENST00000606069 1096 ntBASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 AC105339.1-204ENST00000636249 355 ntBASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.11■□□□□ 0.81
SHROOM1Q2M3G4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 AC022145.2-201ENST00000598203 171 ntBASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 AC099522.2-201ENST00000607001 744 ntBASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHROOM1Q2M3G4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms