Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.03■□□□□ 0.32
SHMT2P34897 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.03■□□□□ 0.32
SHMT2P34897 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.03■□□□□ 0.32
SHMT2P34897 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 AC073592.5-201ENST00000624854 528 ntBASIC17.03■□□□□ 0.32
SHMT2P34897 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.03■□□□□ 0.32
SHMT2P34897 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 KRT8P10-201ENST00000450021 1447 ntBASIC17.03■□□□□ 0.32
SHMT2P34897 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.03■□□□□ 0.32
SHMT2P34897 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.02■□□□□ 0.32
SHMT2P34897 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SHMT2P34897 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.02■□□□□ 0.32
SHMT2P34897 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SHMT2P34897 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.32
SHMT2P34897 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 AC003669.1-201ENST00000334569 611 ntBASIC17.02■□□□□ 0.32
SHMT2P34897 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.02■□□□□ 0.32
SHMT2P34897 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.02■□□□□ 0.32
SHMT2P34897 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
SHMT2P34897 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.02■□□□□ 0.32
SHMT2P34897 FGFR3P6-201ENST00000457012 610 ntBASIC17.02■□□□□ 0.32
SHMT2P34897 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
SHMT2P34897 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
SHMT2P34897 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.02■□□□□ 0.32
SHMT2P34897 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.02■□□□□ 0.32
SHMT2P34897 AL031008.1-201ENST00000619963 541 ntBASIC17.02■□□□□ 0.32
SHMT2P34897 AL139288.1-201ENST00000623748 933 ntBASIC17.02■□□□□ 0.32
SHMT2P34897 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHMT2P34897 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.31
SHMT2P34897 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.02■□□□□ 0.31
SHMT2P34897 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHMT2P34897 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.02■□□□□ 0.31
SHMT2P34897 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHMT2P34897 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.01■□□□□ 0.31
SHMT2P34897 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SHMT2P34897 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.01■□□□□ 0.31
SHMT2P34897 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.01■□□□□ 0.31
SHMT2P34897 KLF4P1-201ENST00000412782 1185 ntBASIC17.01■□□□□ 0.31
SHMT2P34897 AC079781.3-201ENST00000449110 356 ntBASIC17.01■□□□□ 0.31
SHMT2P34897 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.01■□□□□ 0.31
SHMT2P34897 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.01■□□□□ 0.31
SHMT2P34897 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.01■□□□□ 0.31
SHMT2P34897 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.01■□□□□ 0.31
SHMT2P34897 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHMT2P34897 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHMT2P34897 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.01■□□□□ 0.31
SHMT2P34897 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SHMT2P34897 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 REXO1L11P-201ENST00000620964 1927 ntBASIC17■□□□□ 0.31
SHMT2P34897 AL356309.3-201ENST00000624132 1934 ntBASIC17■□□□□ 0.31
SHMT2P34897 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms