Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm11543-201ENSMUST00000120758 370 ntBASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Rprl2-201ENSMUST00000157150 290 ntBASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Prpf40aQ9R1C7 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Gm6973-201ENSMUST00000117080 721 ntBASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Gm18057-201ENSMUST00000208220 503 ntBASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Prpf40aQ9R1C7 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.85■□□□□ 0.13
Prpf40aQ9R1C7 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms