Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMK1P53667 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
LIMK1P53667 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 AP002414.1-201ENST00000391405 1147 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 AC236430.1-201ENST00000402231 743 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.13■□□□□ 0.33
LIMK1P53667 FAM207CP-201ENST00000443486 507 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 SIGLEC30P-201ENST00000455569 941 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMK1P53667 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMK1P53667 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMK1P53667 OR7E47P-204ENST00000575924 449 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.13■□□□□ 0.33
LIMK1P53667 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.13■□□□□ 0.33
LIMK1P53667 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.13■□□□□ 0.33
LIMK1P53667 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIMK1P53667 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMK1P53667 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMK1P53667 ESPNP-201ENST00000270691 2015 ntBASIC17.13■□□□□ 0.33
LIMK1P53667 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMK1P53667 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 HLA-V-201ENST00000429037 534 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 AC055876.3-201ENST00000431496 288 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 AC007274.1-201ENST00000439805 662 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 CNN2P2-201ENST00000443536 909 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 CNN2P3-201ENST00000450201 906 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMK1P53667 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMK1P53667 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 DUX4L27-201ENST00000554796 1261 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 DUX4L17-201ENST00000557360 1267 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMK1P53667 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.12■□□□□ 0.33
LIMK1P53667 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 AC138649.4-201ENST00000612222 287 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 AL136317.3-201ENST00000618497 906 ntBASIC17.12■□□□□ 0.33
LIMK1P53667 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMK1P53667 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LIMK1P53667 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMK1P53667 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LIMK1P53667 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMK1P53667 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMK1P53667 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMK1P53667 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms