Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
VCANP13611 AL023806.1-201ENST00000603994 1649 ntBASIC17.81■□□□□ 0.44
VCANP13611 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.81■□□□□ 0.44
VCANP13611 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
VCANP13611 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCANP13611 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.81■□□□□ 0.44
VCANP13611 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 MIR346-201ENST00000362234 95 ntBASIC17.8■□□□□ 0.44
VCANP13611 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.8■□□□□ 0.44
VCANP13611 BTBD6P1-201ENST00000412176 1267 ntBASIC17.8■□□□□ 0.44
VCANP13611 RARRES2P8-201ENST00000566335 367 ntBASIC17.8■□□□□ 0.44
VCANP13611 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.8■□□□□ 0.44
VCANP13611 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.8■□□□□ 0.44
VCANP13611 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.8■□□□□ 0.44
VCANP13611 DFFBP1-201ENST00000433250 979 ntBASIC17.8■□□□□ 0.44
VCANP13611 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.8■□□□□ 0.44
VCANP13611 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.8■□□□□ 0.44
VCANP13611 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.8■□□□□ 0.44
VCANP13611 MIR4706-201ENST00000582134 82 ntBASIC17.8■□□□□ 0.44
VCANP13611 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCANP13611 ESPNP-201ENST00000270691 2015 ntBASIC17.8■□□□□ 0.44
VCANP13611 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.8■□□□□ 0.44
VCANP13611 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.79■□□□□ 0.44
VCANP13611 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.79■□□□□ 0.44
VCANP13611 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.79■□□□□ 0.44
VCANP13611 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.79■□□□□ 0.44
VCANP13611 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.79■□□□□ 0.44
VCANP13611 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.79■□□□□ 0.44
VCANP13611 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.79■□□□□ 0.44
VCANP13611 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.79■□□□□ 0.44
VCANP13611 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.79■□□□□ 0.44
VCANP13611 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VCANP13611 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.79■□□□□ 0.44
VCANP13611 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCANP13611 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.78■□□□□ 0.44
VCANP13611 AC006538.1-201ENST00000567905 1585 ntBASIC17.78■□□□□ 0.44
VCANP13611 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.78■□□□□ 0.44
VCANP13611 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCANP13611 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.78■□□□□ 0.44
VCANP13611 AC234783.1-201ENST00000441761 496 ntBASIC17.78■□□□□ 0.44
VCANP13611 GNAQP1-201ENST00000444815 1067 ntBASIC17.78■□□□□ 0.44
VCANP13611 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms