Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Gm6973-201ENSMUST00000117080 721 ntBASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.74■□□□□ 0.11
Chmp6P0C0A3 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Chchd1-203ENSMUST00000224633 557 ntBASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Chmp6P0C0A3 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gm11543-201ENSMUST00000120758 370 ntBASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Chmp6P0C0A3 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms