Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 AL023284.2-201ENST00000405850 579 ntBASIC16.86■□□□□ 0.29
LDLRP01130 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 CHCHD2P8-201ENST00000429873 447 ntBASIC16.86■□□□□ 0.29
LDLRP01130 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.86■□□□□ 0.29
LDLRP01130 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.86■□□□□ 0.29
LDLRP01130 AC091304.2-201ENST00000564639 760 ntBASIC16.86■□□□□ 0.29
LDLRP01130 SLC25A6P4-201ENST00000586535 553 ntBASIC16.86■□□□□ 0.29
LDLRP01130 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 LINC01711-201ENST00000598340 967 ntBASIC16.86■□□□□ 0.29
LDLRP01130 AL121772.3-201ENST00000610840 674 ntBASIC16.86■□□□□ 0.29
LDLRP01130 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDLRP01130 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.86■□□□□ 0.29
LDLRP01130 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.85■□□□□ 0.29
LDLRP01130 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.85■□□□□ 0.29
LDLRP01130 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.85■□□□□ 0.29
LDLRP01130 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.85■□□□□ 0.29
LDLRP01130 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
LDLRP01130 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 AC139530.3-201ENST00000620344 690 ntBASIC16.85■□□□□ 0.29
LDLRP01130 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
LDLRP01130 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LDLRP01130 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.85■□□□□ 0.29
LDLRP01130 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.85■□□□□ 0.29
LDLRP01130 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDLRP01130 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.84■□□□□ 0.29
LDLRP01130 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.84■□□□□ 0.29
LDLRP01130 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 AC079776.4-201ENST00000511039 504 ntBASIC16.84■□□□□ 0.29
LDLRP01130 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 AP002469.2-201ENST00000531724 424 ntBASIC16.84■□□□□ 0.29
LDLRP01130 AL662844.1-201ENST00000546340 181 ntBASIC16.84■□□□□ 0.29
LDLRP01130 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
LDLRP01130 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms