Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
FOXA1P55317 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
FOXA1P55317 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.92■□□□□ 0.3
FOXA1P55317 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
FOXA1P55317 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA1P55317 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
FOXA1P55317 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
FOXA1P55317 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXA1P55317 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 AC125634.1-201ENST00000438758 1403 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
FOXA1P55317 AL645929.1-201ENST00000420084 975 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 AL671277.2-201ENST00000458060 996 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 AC022616.7-201ENST00000525383 220 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 AC005336.2-201ENST00000593183 939 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 LINC01023-201ENST00000606054 436 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
FOXA1P55317 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.91■□□□□ 0.3
FOXA1P55317 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXA1P55317 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
FOXA1P55317 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA1P55317 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA1P55317 OR6D1P-202ENST00000641007 5290 ntBASIC16.9■□□□□ 0.3
FOXA1P55317 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA1P55317 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.9■□□□□ 0.3
FOXA1P55317 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
FOXA1P55317 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA1P55317 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 TSPY22P-201ENST00000427496 604 ntBASIC16.9■□□□□ 0.3
FOXA1P55317 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA1P55317 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.9■□□□□ 0.3
FOXA1P55317 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.9■□□□□ 0.3
FOXA1P55317 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.9■□□□□ 0.3
FOXA1P55317 AL592071.1-201ENST00000611956 408 ntBASIC16.9■□□□□ 0.3
FOXA1P55317 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA1P55317 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
FOXA1P55317 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
FOXA1P55317 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 RNF216P1-203ENST00000404404 2427 ntBASIC16.9■□□□□ 0.3
FOXA1P55317 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
FOXA1P55317 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA1P55317 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXA1P55317 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA1P55317 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
FOXA1P55317 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
FOXA1P55317 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms