Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX3P48380 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.46■□□□□ 0.22
RFX3P48380 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFX3P48380 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
RFX3P48380 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.46■□□□□ 0.22
RFX3P48380 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFX3P48380 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
RFX3P48380 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.45■□□□□ 0.22
RFX3P48380 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 AC069148.1-201ENST00000608741 768 ntBASIC16.45■□□□□ 0.22
RFX3P48380 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFX3P48380 AC012313.1-201ENST00000593393 3059 ntBASIC16.45■□□□□ 0.22
RFX3P48380 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX3P48380 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RFX3P48380 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX3P48380 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
RFX3P48380 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
RFX3P48380 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 LINC00265-3P-201ENST00000447588 903 ntBASIC16.44■□□□□ 0.22
RFX3P48380 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX3P48380 VENTXP7-201ENST00000475503 772 ntBASIC16.44■□□□□ 0.22
RFX3P48380 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX3P48380 AP002414.4-201ENST00000589764 1148 ntBASIC16.44■□□□□ 0.22
RFX3P48380 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.44■□□□□ 0.22
RFX3P48380 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX3P48380 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX3P48380 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX3P48380 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RFX3P48380 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms