Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ushbp1Q8R370 H3f3aos-201ENSMUST00000097448 2905 ntBASIC24.78■■□□□ 1.56
Ushbp1Q8R370 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ushbp1Q8R370 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ushbp1Q8R370 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ushbp1Q8R370 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ushbp1Q8R370 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ushbp1Q8R370 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
Ushbp1Q8R370 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC24.74■■□□□ 1.55
Ushbp1Q8R370 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Ushbp1Q8R370 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ushbp1Q8R370 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ushbp1Q8R370 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ushbp1Q8R370 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Ushbp1Q8R370 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ushbp1Q8R370 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ushbp1Q8R370 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ushbp1Q8R370 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ushbp1Q8R370 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC24.72■■□□□ 1.55
Ushbp1Q8R370 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
Ushbp1Q8R370 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Ushbp1Q8R370 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC24.71■■□□□ 1.55
Ushbp1Q8R370 AC151971.4-201ENSMUST00000214717 704 ntBASIC24.71■■□□□ 1.55
Ushbp1Q8R370 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Ushbp1Q8R370 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ushbp1Q8R370 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Ushbp1Q8R370 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Ushbp1Q8R370 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Ushbp1Q8R370 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24.7■■□□□ 1.54
Ushbp1Q8R370 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Ushbp1Q8R370 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Ushbp1Q8R370 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Ushbp1Q8R370 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Ushbp1Q8R370 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Ushbp1Q8R370 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
Ushbp1Q8R370 Gm6934-201ENSMUST00000194780 1905 ntBASIC24.67■■□□□ 1.54
Ushbp1Q8R370 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC24.67■■□□□ 1.54
Ushbp1Q8R370 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Ushbp1Q8R370 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Ushbp1Q8R370 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ushbp1Q8R370 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ushbp1Q8R370 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Gm15039-201ENSMUST00000118914 875 ntBASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Gm10420-201ENSMUST00000121713 882 ntBASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Gm5812-201ENSMUST00000061073 957 ntBASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ushbp1Q8R370 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
Ushbp1Q8R370 Gm22567-201ENSMUST00000175542 342 ntBASIC24.63■■□□□ 1.53
Ushbp1Q8R370 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Ushbp1Q8R370 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Ushbp1Q8R370 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC24.62■■□□□ 1.53
Ushbp1Q8R370 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
Ushbp1Q8R370 Gm7199-201ENSMUST00000118327 1485 ntBASIC24.61■■□□□ 1.53
Ushbp1Q8R370 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC24.61■■□□□ 1.53
Ushbp1Q8R370 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Ushbp1Q8R370 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ushbp1Q8R370 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.6■■□□□ 1.53
Ushbp1Q8R370 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
Ushbp1Q8R370 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ushbp1Q8R370 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms