Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nedd8P29595 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nedd8P29595 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.53■□□□□ 0.88
Nedd8P29595 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nedd8P29595 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.52■□□□□ 0.88
Nedd8P29595 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nedd8P29595 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nedd8P29595 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nedd8P29595 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Nedd8P29595 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nedd8P29595 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nedd8P29595 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Nedd8P29595 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nedd8P29595 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nedd8P29595 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nedd8P29595 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nedd8P29595 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nedd8P29595 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Nedd8P29595 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nedd8P29595 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nedd8P29595 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nedd8P29595 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nedd8P29595 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nedd8P29595 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nedd8P29595 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nedd8P29595 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nedd8P29595 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nedd8P29595 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nedd8P29595 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.46■□□□□ 0.87
Nedd8P29595 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nedd8P29595 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nedd8P29595 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nedd8P29595 Gm30023-201ENSMUST00000197970 889 ntBASIC20.44■□□□□ 0.86
Nedd8P29595 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Nedd8P29595 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Nedd8P29595 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nedd8P29595 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Nedd8P29595 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Nedd8P29595 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nedd8P29595 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nedd8P29595 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nedd8P29595 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Nedd8P29595 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Nedd8P29595 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nedd8P29595 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Nedd8P29595 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nedd8P29595 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Nedd8P29595 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nedd8P29595 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nedd8P29595 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nedd8P29595 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nedd8P29595 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Nedd8P29595 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nedd8P29595 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.4■□□□□ 0.86
Nedd8P29595 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nedd8P29595 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Nedd8P29595 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Nedd8P29595 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nedd8P29595 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nedd8P29595 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nedd8P29595 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nedd8P29595 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
Nedd8P29595 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.38■□□□□ 0.85
Nedd8P29595 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nedd8P29595 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nedd8P29595 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.38■□□□□ 0.85
Nedd8P29595 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Nedd8P29595 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nedd8P29595 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nedd8P29595 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nedd8P29595 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Nedd8P29595 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nedd8P29595 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nedd8P29595 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nedd8P29595 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nedd8P29595 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Nedd8P29595 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.36■□□□□ 0.85
Nedd8P29595 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Nedd8P29595 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Nedd8P29595 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nedd8P29595 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nedd8P29595 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nedd8P29595 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nedd8P29595 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Nedd8P29595 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nedd8P29595 Gm16148-201ENSMUST00000119653 893 ntBASIC20.34■□□□□ 0.85
Nedd8P29595 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Nedd8P29595 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nedd8P29595 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nedd8P29595 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Nedd8P29595 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Nedd8P29595 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nedd8P29595 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms