Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.69■□□□□ 0.9
Cx3cl1O35188 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cx3cl1O35188 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cx3cl1O35188 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cx3cl1O35188 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cx3cl1O35188 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.68■□□□□ 0.9
Cx3cl1O35188 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.68■□□□□ 0.9
Cx3cl1O35188 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cx3cl1O35188 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cx3cl1O35188 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cx3cl1O35188 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cx3cl1O35188 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cx3cl1O35188 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.66■□□□□ 0.9
Cx3cl1O35188 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cx3cl1O35188 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cx3cl1O35188 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cx3cl1O35188 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cx3cl1O35188 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Cx3cl1O35188 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cx3cl1O35188 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Cx3cl1O35188 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Cx3cl1O35188 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Cx3cl1O35188 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.64■□□□□ 0.89
Cx3cl1O35188 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cx3cl1O35188 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cx3cl1O35188 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cx3cl1O35188 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cx3cl1O35188 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cx3cl1O35188 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cx3cl1O35188 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cx3cl1O35188 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.61■□□□□ 0.89
Cx3cl1O35188 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Cx3cl1O35188 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cx3cl1O35188 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cx3cl1O35188 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cx3cl1O35188 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cx3cl1O35188 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cx3cl1O35188 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Cx3cl1O35188 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Cx3cl1O35188 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.58■□□□□ 0.88
Cx3cl1O35188 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cx3cl1O35188 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.57■□□□□ 0.88
Cx3cl1O35188 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cx3cl1O35188 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
Cx3cl1O35188 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cx3cl1O35188 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cx3cl1O35188 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.55■□□□□ 0.88
Cx3cl1O35188 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cx3cl1O35188 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Gm10420-201ENSMUST00000121713 882 ntBASIC20.54■□□□□ 0.88
Cx3cl1O35188 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cx3cl1O35188 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cx3cl1O35188 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cx3cl1O35188 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cx3cl1O35188 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cx3cl1O35188 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cx3cl1O35188 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Cx3cl1O35188 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cx3cl1O35188 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Cx3cl1O35188 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.52■□□□□ 0.88
Cx3cl1O35188 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.52■□□□□ 0.88
Cx3cl1O35188 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.52■□□□□ 0.87
Cx3cl1O35188 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cx3cl1O35188 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms