Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6d-5A0A075B6B9 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6d-5A0A075B6B9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6d-5A0A075B6B9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6d-5A0A075B6B9 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6d-5A0A075B6B9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trav6d-5A0A075B6B9 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav6d-5A0A075B6B9 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav6d-5A0A075B6B9 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trav6d-5A0A075B6B9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6d-5A0A075B6B9 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6d-5A0A075B6B9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6d-5A0A075B6B9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6d-5A0A075B6B9 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6d-5A0A075B6B9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6d-5A0A075B6B9 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.86■□□□□ 0.45
Trav6d-5A0A075B6B9 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6d-5A0A075B6B9 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6d-5A0A075B6B9 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6d-5A0A075B6B9 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Gm45855-201ENSMUST00000212546 880 ntBASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6d-5A0A075B6B9 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav6d-5A0A075B6B9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.83■□□□□ 0.45
Trav6d-5A0A075B6B9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav6d-5A0A075B6B9 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.83■□□□□ 0.44
Trav6d-5A0A075B6B9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6d-5A0A075B6B9 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6d-5A0A075B6B9 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6d-5A0A075B6B9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Gm22567-201ENSMUST00000175542 342 ntBASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6d-5A0A075B6B9 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6d-5A0A075B6B9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6d-5A0A075B6B9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6d-5A0A075B6B9 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6d-5A0A075B6B9 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6d-5A0A075B6B9 AC164433.2-201ENSMUST00000226346 1701 ntBASIC17.78■□□□□ 0.44
Trav6d-5A0A075B6B9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
Trav6d-5A0A075B6B9 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6d-5A0A075B6B9 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6d-5A0A075B6B9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6d-5A0A075B6B9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6d-5A0A075B6B9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav6d-5A0A075B6B9 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6d-5A0A075B6B9 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6d-5A0A075B6B9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 157.9 ms