Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX2Q9NPC8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 AC009336.1-201ENST00000608941 1553 ntBASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 AL135999.2-201ENST00000622438 1686 ntBASIC18.77■□□□□ 0.6
SIX2Q9NPC8 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX2Q9NPC8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SIX2Q9NPC8 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.77■□□□□ 0.59
SIX2Q9NPC8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SIX2Q9NPC8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX2Q9NPC8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 ATP5G2P1-201ENST00000433580 426 ntBASIC18.75■□□□□ 0.59
SIX2Q9NPC8 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 MINOS1P3-201ENST00000457048 203 ntBASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AC096582.2-201ENST00000510860 516 ntBASIC18.75■□□□□ 0.59
SIX2Q9NPC8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AC074051.2-201ENST00000565115 352 ntBASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX2Q9NPC8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms