Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC245100.3-201ENST00000441281 285 ntBASIC21.07■□□□□ 0.96
BRCA1P38398 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
BRCA1P38398 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.07■□□□□ 0.96
BRCA1P38398 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.07■□□□□ 0.96
BRCA1P38398 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
BRCA1P38398 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.06■□□□□ 0.96
BRCA1P38398 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC21.06■□□□□ 0.96
BRCA1P38398 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.06■□□□□ 0.96
BRCA1P38398 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.06■□□□□ 0.96
BRCA1P38398 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.06■□□□□ 0.96
BRCA1P38398 API5-211ENST00000534695 560 ntTSL 5 BASIC21.06■□□□□ 0.96
BRCA1P38398 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.06■□□□□ 0.96
BRCA1P38398 AC008267.7-201ENST00000624570 1194 ntBASIC21.06■□□□□ 0.96
BRCA1P38398 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BRCA1P38398 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
BRCA1P38398 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.06■□□□□ 0.96
BRCA1P38398 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC21.05■□□□□ 0.96
BRCA1P38398 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC21.05■□□□□ 0.96
BRCA1P38398 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.05■□□□□ 0.96
BRCA1P38398 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
BRCA1P38398 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.05■□□□□ 0.96
BRCA1P38398 AC004233.3-201ENST00000607794 1269 ntBASIC21.05■□□□□ 0.96
BRCA1P38398 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
BRCA1P38398 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.05■□□□□ 0.96
BRCA1P38398 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 REEP4-207ENST00000523293 913 ntTSL 3 BASIC21.05■□□□□ 0.96
BRCA1P38398 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.05■□□□□ 0.96
BRCA1P38398 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
BRCA1P38398 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRCA1P38398 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.05■□□□□ 0.96
BRCA1P38398 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.04■□□□□ 0.96
BRCA1P38398 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
BRCA1P38398 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
BRCA1P38398 AL512638.1-201ENST00000457493 794 ntBASIC21.04■□□□□ 0.96
BRCA1P38398 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.04■□□□□ 0.96
BRCA1P38398 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.04■□□□□ 0.96
BRCA1P38398 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRCA1P38398 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
BRCA1P38398 RPS2P32-201ENST00000439199 892 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 AC027369.6-201ENST00000525520 931 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 AC109635.5-201ENST00000533593 962 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
BRCA1P38398 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
BRCA1P38398 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.03■□□□□ 0.96
BRCA1P38398 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 AC119751.2-201ENST00000504529 210 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.03■□□□□ 0.96
BRCA1P38398 AC027307.2-201ENST00000591252 911 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 AL031055.1-201ENST00000606362 631 ntBASIC21.03■□□□□ 0.96
BRCA1P38398 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRCA1P38398 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRCA1P38398 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRCA1P38398 AC046185.3-201ENST00000623228 1824 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms