Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 AL121894.2-201ENST00000602977 491 ntBASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 AP001269.4-201ENST00000609611 512 ntBASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 AC006116.8-202ENST00000587620 1550 ntBASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM39Q9HCM9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AC068880.1-201ENST00000507289 2297 ntBASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AL049757.1-201ENST00000616842 1596 ntBASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 MTDHP3-201ENST00000594186 672 ntBASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AL121912.1-201ENST00000603683 238 ntBASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AL355877.3-201ENST00000622820 899 ntBASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM39Q9HCM9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 AC008764.6-201ENST00000595909 2069 ntBASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 PMPCAP1-201ENST00000508114 1576 ntBASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 AC008608.2-201ENST00000606089 416 ntBASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 AL353593.2-201ENST00000602529 1483 ntBASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 NOC2LP2-201ENST00000407594 1944 ntBASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM39Q9HCM9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms