Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.71■□□□□ 0.59
SSR1P43307 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 PKD1P5-201ENST00000532415 10291 ntBASIC18.71■□□□□ 0.59
SSR1P43307 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
SSR1P43307 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SSR1P43307 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.71■□□□□ 0.59
SSR1P43307 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SSR1P43307 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.7■□□□□ 0.58
SSR1P43307 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
SSR1P43307 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.7■□□□□ 0.58
SSR1P43307 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SSR1P43307 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.7■□□□□ 0.58
SSR1P43307 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SSR1P43307 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SSR1P43307 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SSR1P43307 LINC01311-201ENST00000565162 1445 ntBASIC18.69■□□□□ 0.58
SSR1P43307 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.69■□□□□ 0.58
SSR1P43307 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
SSR1P43307 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.69■□□□□ 0.58
SSR1P43307 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SSR1P43307 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
SSR1P43307 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SSR1P43307 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSR1P43307 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSR1P43307 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SSR1P43307 KRT8P47-201ENST00000604727 1398 ntBASIC18.68■□□□□ 0.58
SSR1P43307 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSR1P43307 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSR1P43307 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SSR1P43307 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSR1P43307 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms