Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC24.42■■□□□ 1.5
NPHP4O75161 MIR4453-201ENST00000584019 89 ntBASIC24.42■■□□□ 1.5
NPHP4O75161 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.42■■□□□ 1.5
NPHP4O75161 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP4O75161 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 AC093677.2-201ENST00000600169 1863 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 ENSA-206ENST00000361631 725 ntTSL 2 BASIC24.41■■□□□ 1.5
NPHP4O75161 AC079776.1-201ENST00000401540 1152 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 PTPA-220ENST00000436883 532 ntTSL 4 BASIC24.41■■□□□ 1.5
NPHP4O75161 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
NPHP4O75161 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC24.41■■□□□ 1.5
NPHP4O75161 TP53TG3HP-202ENST00000569755 579 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 AL132655.2-201ENST00000596276 594 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP4O75161 IGHV3-72-202ENST00000621503 303 ntBASIC24.41■■□□□ 1.5
NPHP4O75161 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP4O75161 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
NPHP4O75161 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC24.4■■□□□ 1.5
NPHP4O75161 MIR1909-201ENST00000411312 80 ntBASIC24.4■■□□□ 1.5
NPHP4O75161 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC24.4■■□□□ 1.5
NPHP4O75161 AC027369.6-201ENST00000525520 931 ntBASIC24.4■■□□□ 1.5
NPHP4O75161 AC109635.5-201ENST00000533593 962 ntBASIC24.4■■□□□ 1.5
NPHP4O75161 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC24.4■■□□□ 1.5
NPHP4O75161 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
NPHP4O75161 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP4O75161 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
NPHP4O75161 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP4O75161 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC24.39■■□□□ 1.5
NPHP4O75161 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP4O75161 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC24.39■■□□□ 1.5
NPHP4O75161 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC24.39■■□□□ 1.5
NPHP4O75161 GIMAP3P-201ENST00000495150 836 ntBASIC24.39■■□□□ 1.5
NPHP4O75161 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
NPHP4O75161 CDK4-206ENST00000549606 558 ntTSL 2 BASIC24.39■■□□□ 1.5
NPHP4O75161 SSH2-210ENST00000582084 560 ntTSL 3 BASIC24.39■■□□□ 1.5
NPHP4O75161 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.5
NPHP4O75161 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.39■■□□□ 1.5
NPHP4O75161 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP4O75161 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP4O75161 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP4O75161 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC24.39■■□□□ 1.49
NPHP4O75161 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP4O75161 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 AC126763.1-201ENST00000552015 2118 ntBASIC24.38■■□□□ 1.49
NPHP4O75161 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
NPHP4O75161 AL135999.2-201ENST00000622438 1686 ntBASIC24.38■■□□□ 1.49
NPHP4O75161 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP4O75161 RPS2P32-201ENST00000439199 892 ntBASIC24.38■■□□□ 1.49
NPHP4O75161 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP4O75161 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP4O75161 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
NPHP4O75161 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC24.38■■□□□ 1.49
NPHP4O75161 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP4O75161 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP4O75161 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP4O75161 AC073130.3-201ENST00000624389 2278 ntBASIC24.38■■□□□ 1.49
NPHP4O75161 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP4O75161 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP4O75161 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP4O75161 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC24.37■■□□□ 1.49
NPHP4O75161 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP4O75161 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC24.37■■□□□ 1.49
NPHP4O75161 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC24.37■■□□□ 1.49
NPHP4O75161 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC24.37■■□□□ 1.49
NPHP4O75161 AC017083.2-201ENST00000608069 979 ntBASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms