Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC28.82■■■□□ 2.2
IFT140Q96RY7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
IFT140Q96RY7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC28.82■■■□□ 2.2
IFT140Q96RY7 AP000842.3-202ENST00000569238 1080 ntBASIC28.82■■■□□ 2.2
IFT140Q96RY7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC28.82■■■□□ 2.2
IFT140Q96RY7 AC004233.3-201ENST00000607794 1269 ntBASIC28.82■■■□□ 2.2
IFT140Q96RY7 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC28.82■■■□□ 2.2
IFT140Q96RY7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
IFT140Q96RY7 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
IFT140Q96RY7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 AC245100.3-201ENST00000441281 285 ntBASIC28.81■■■□□ 2.2
IFT140Q96RY7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC28.81■■■□□ 2.2
IFT140Q96RY7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
IFT140Q96RY7 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC28.8■■■□□ 2.2
IFT140Q96RY7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC28.8■■■□□ 2.2
IFT140Q96RY7 IGHV3-72-202ENST00000621503 303 ntBASIC28.8■■■□□ 2.2
IFT140Q96RY7 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC28.8■■■□□ 2.2
IFT140Q96RY7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
IFT140Q96RY7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 HMGA1P7-201ENST00000406908 502 ntBASIC28.79■■■□□ 2.2
IFT140Q96RY7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC28.79■■■□□ 2.2
IFT140Q96RY7 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC28.79■■■□□ 2.2
IFT140Q96RY7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC28.79■■■□□ 2.2
IFT140Q96RY7 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
IFT140Q96RY7 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
IFT140Q96RY7 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 AL132655.2-201ENST00000596276 594 ntBASIC28.78■■■□□ 2.2
IFT140Q96RY7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 AC093677.2-201ENST00000600169 1863 ntBASIC28.78■■■□□ 2.2
IFT140Q96RY7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 TP53TG3HP-202ENST00000569755 579 ntBASIC28.78■■■□□ 2.2
IFT140Q96RY7 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC28.78■■■□□ 2.2
IFT140Q96RY7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
IFT140Q96RY7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC28.77■■■□□ 2.2
IFT140Q96RY7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
IFT140Q96RY7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC28.77■■■□□ 2.2
IFT140Q96RY7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
IFT140Q96RY7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
IFT140Q96RY7 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
IFT140Q96RY7 MIR1909-201ENST00000411312 80 ntBASIC28.77■■■□□ 2.2
IFT140Q96RY7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC28.77■■■□□ 2.2
IFT140Q96RY7 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
IFT140Q96RY7 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC28.77■■■□□ 2.2
IFT140Q96RY7 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC28.77■■■□□ 2.2
IFT140Q96RY7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 AC008267.7-201ENST00000624570 1194 ntBASIC28.76■■■□□ 2.19
IFT140Q96RY7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC28.76■■■□□ 2.19
IFT140Q96RY7 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
IFT140Q96RY7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms