Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS4BO75351 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.3■□□□□ 0.36
VPS4BO75351 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS4BO75351 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
VPS4BO75351 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 HYMAI.1-201ENST00000620949 238 ntBASIC17.3■□□□□ 0.36
VPS4BO75351 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS4BO75351 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 AC080080.1-201ENST00000625121 2420 ntBASIC17.29■□□□□ 0.36
VPS4BO75351 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VPS4BO75351 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.29■□□□□ 0.36
VPS4BO75351 AL645929.1-201ENST00000420084 975 ntBASIC17.29■□□□□ 0.36
VPS4BO75351 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS4BO75351 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VPS4BO75351 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS4BO75351 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS4BO75351 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS4BO75351 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS4BO75351 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 CROCCP2-202ENST00000412962 2773 ntBASIC17.28■□□□□ 0.36
VPS4BO75351 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4BO75351 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4BO75351 PVRIG2P-201ENST00000435460 978 ntBASIC17.28■□□□□ 0.36
VPS4BO75351 AP000347.1-202ENST00000435868 847 ntBASIC17.28■□□□□ 0.36
VPS4BO75351 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.28■□□□□ 0.36
VPS4BO75351 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4BO75351 AC006538.3-201ENST00000612495 578 ntBASIC17.28■□□□□ 0.36
VPS4BO75351 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VPS4BO75351 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS4BO75351 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VPS4BO75351 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms