Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.34■□□□□ 0.37
PKNOX1P55347 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 AL031432.5-201ENST00000641059 760 ntBASIC17.34■□□□□ 0.37
PKNOX1P55347 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.34■□□□□ 0.37
PKNOX1P55347 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PKNOX1P55347 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PKNOX1P55347 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.33■□□□□ 0.37
PKNOX1P55347 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.33■□□□□ 0.37
PKNOX1P55347 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
PKNOX1P55347 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
PKNOX1P55347 AC009949.1-201ENST00000623048 1830 ntBASIC17.33■□□□□ 0.37
PKNOX1P55347 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PKNOX1P55347 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PKNOX1P55347 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PKNOX1P55347 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.33■□□□□ 0.37
PKNOX1P55347 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 AL596275.1-201ENST00000423464 877 ntBASIC17.33■□□□□ 0.36
PKNOX1P55347 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.33■□□□□ 0.36
PKNOX1P55347 RASA4DP-201ENST00000460726 1199 ntBASIC17.33■□□□□ 0.36
PKNOX1P55347 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.33■□□□□ 0.36
PKNOX1P55347 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PKNOX1P55347 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PKNOX1P55347 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.33■□□□□ 0.36
PKNOX1P55347 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PKNOX1P55347 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.33■□□□□ 0.36
PKNOX1P55347 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.32■□□□□ 0.36
PKNOX1P55347 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.32■□□□□ 0.36
PKNOX1P55347 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.32■□□□□ 0.36
PKNOX1P55347 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.32■□□□□ 0.36
PKNOX1P55347 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 SLC25A3P1-201ENST00000443844 931 ntBASIC17.32■□□□□ 0.36
PKNOX1P55347 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.32■□□□□ 0.36
PKNOX1P55347 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.32■□□□□ 0.36
PKNOX1P55347 AL136038.4-201ENST00000603606 1261 ntBASIC17.32■□□□□ 0.36
PKNOX1P55347 AL023973.1-201ENST00000624619 620 ntBASIC17.32■□□□□ 0.36
PKNOX1P55347 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.32■□□□□ 0.36
PKNOX1P55347 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PKNOX1P55347 AL391807.1-203ENST00000604392 2365 ntBASIC17.32■□□□□ 0.36
PKNOX1P55347 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PKNOX1P55347 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.32■□□□□ 0.36
PKNOX1P55347 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PKNOX1P55347 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PKNOX1P55347 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 CROCCP1-201ENST00000426910 5675 ntBASIC17.31■□□□□ 0.36
PKNOX1P55347 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.31■□□□□ 0.36
PKNOX1P55347 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.31■□□□□ 0.36
PKNOX1P55347 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms