Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
RAPGEF3O95398 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC26.19■■□□□ 1.78
RAPGEF3O95398 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC26.18■■□□□ 1.78
RAPGEF3O95398 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
RAPGEF3O95398 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RAPGEF3O95398 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
RAPGEF3O95398 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RAPGEF3O95398 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC26.17■■□□□ 1.78
RAPGEF3O95398 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RAPGEF3O95398 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RAPGEF3O95398 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
RAPGEF3O95398 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RAPGEF3O95398 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RAPGEF3O95398 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 PTGES2-AS1-201ENST00000443493 2100 ntBASIC26.16■■□□□ 1.78
RAPGEF3O95398 AC087163.2-201ENST00000457299 853 ntBASIC26.16■■□□□ 1.78
RAPGEF3O95398 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 MIR6799-201ENST00000620297 69 ntBASIC26.16■■□□□ 1.78
RAPGEF3O95398 AC084121.4-201ENST00000641598 221 ntBASIC26.16■■□□□ 1.78
RAPGEF3O95398 AF228730.8-201ENST00000642140 221 ntBASIC26.16■■□□□ 1.78
RAPGEF3O95398 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
RAPGEF3O95398 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
RAPGEF3O95398 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 SPDYE7P-202ENST00000420373 878 ntBASIC26.15■■□□□ 1.78
RAPGEF3O95398 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 CD7-202ENST00000578509 925 ntTSL 3 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 AL606495.2-201ENST00000605867 535 ntBASIC26.15■■□□□ 1.78
RAPGEF3O95398 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.15■■□□□ 1.78
RAPGEF3O95398 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RAPGEF3O95398 UXT-AS1-201ENST00000590504 1525 ntBASIC26.14■■□□□ 1.78
RAPGEF3O95398 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 GATD1-206ENST00000526325 756 ntTSL 5 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 THTPA-204ENST00000554970 569 ntTSL 4 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 THTPA-206ENST00000556015 535 ntTSL 3 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 AL645728.2-201ENST00000641974 660 ntBASIC26.14■■□□□ 1.78
RAPGEF3O95398 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 EFTUD1P1-204ENST00000560401 1798 ntBASIC26.14■■□□□ 1.78
RAPGEF3O95398 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
RAPGEF3O95398 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RAPGEF3O95398 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC26.14■■□□□ 1.77
RAPGEF3O95398 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
RAPGEF3O95398 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms