Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC007952.6-201ENST00000573168 2673 ntBASIC12.61□□□□□ -0.39
PRKDCP78527 AC003957.1-201ENST00000625108 2673 ntBASIC12.61□□□□□ -0.39
PRKDCP78527 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC12.61□□□□□ -0.39
PRKDCP78527 AC007541.1-201ENST00000570282 1469 ntBASIC12.61□□□□□ -0.39
PRKDCP78527 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.61□□□□□ -0.39
PRKDCP78527 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.61□□□□□ -0.39
PRKDCP78527 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PRKDCP78527 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.61□□□□□ -0.39
PRKDCP78527 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.61□□□□□ -0.39
PRKDCP78527 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.61□□□□□ -0.39
PRKDCP78527 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PRKDCP78527 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 AC241585.1-201ENST00000433527 519 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 INE1-201ENST00000456273 945 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 TPI1-206ENST00000488464 791 ntTSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.6□□□□□ -0.39
PRKDCP78527 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 MIR346-201ENST00000362234 95 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 LINC00982-205ENST00000420957 435 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 AC099548.2-209ENST00000480264 625 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.6□□□□□ -0.39
PRKDCP78527 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 RN7SL837P-201ENST00000463010 287 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 MIR4453-201ENST00000584019 89 ntBASIC12.6□□□□□ -0.39
PRKDCP78527 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.6□□□□□ -0.39
PRKDCP78527 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PRKDCP78527 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC12.6□□□□□ -0.39
PRKDCP78527 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PRKDCP78527 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms