Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.78■□□□□ 0.28
LIM2P55344 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
LIM2P55344 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 BX276092.7-203ENST00000637198 1536 ntBASIC16.77■□□□□ 0.28
LIM2P55344 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
LIM2P55344 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
LIM2P55344 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.77■□□□□ 0.28
LIM2P55344 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.77■□□□□ 0.28
LIM2P55344 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.77■□□□□ 0.28
LIM2P55344 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.77■□□□□ 0.28
LIM2P55344 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.77■□□□□ 0.28
LIM2P55344 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.77■□□□□ 0.28
LIM2P55344 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.77■□□□□ 0.28
LIM2P55344 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.77■□□□□ 0.28
LIM2P55344 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIM2P55344 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIM2P55344 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIM2P55344 AC012313.1-201ENST00000593393 3059 ntBASIC16.77■□□□□ 0.27
LIM2P55344 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIM2P55344 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.77■□□□□ 0.27
LIM2P55344 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIM2P55344 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.77■□□□□ 0.27
LIM2P55344 AC108860.2-201ENST00000562760 2183 ntBASIC16.77■□□□□ 0.27
LIM2P55344 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
LIM2P55344 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.77■□□□□ 0.27
LIM2P55344 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.76■□□□□ 0.27
LIM2P55344 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
LIM2P55344 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
LIM2P55344 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.76■□□□□ 0.27
LIM2P55344 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.76■□□□□ 0.27
LIM2P55344 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
LIM2P55344 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.76■□□□□ 0.27
LIM2P55344 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.76■□□□□ 0.27
LIM2P55344 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
LIM2P55344 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.76■□□□□ 0.27
LIM2P55344 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.76■□□□□ 0.27
LIM2P55344 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIM2P55344 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.75■□□□□ 0.27
LIM2P55344 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
LIM2P55344 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LIM2P55344 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.75■□□□□ 0.27
LIM2P55344 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 COX5BP2-201ENST00000392354 334 ntBASIC16.75■□□□□ 0.27
LIM2P55344 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms