Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.39■□□□□ 0.69
COL6A1P12109 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.39■□□□□ 0.69
COL6A1P12109 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.39■□□□□ 0.69
COL6A1P12109 AL031598.1-201ENST00000561511 1773 ntBASIC19.39■□□□□ 0.69
COL6A1P12109 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 AC097637.2-201ENST00000624096 1997 ntBASIC19.39■□□□□ 0.69
COL6A1P12109 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.39■□□□□ 0.69
COL6A1P12109 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A1P12109 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 ESPNP-201ENST00000270691 2015 ntBASIC19.38■□□□□ 0.69
COL6A1P12109 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A1P12109 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL6A1P12109 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.38■□□□□ 0.69
COL6A1P12109 FAM185BP-201ENST00000443595 716 ntBASIC19.38■□□□□ 0.69
COL6A1P12109 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 AC093010.1-201ENST00000473625 1624 ntBASIC19.38■□□□□ 0.69
COL6A1P12109 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A1P12109 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 AC112191.1-201ENST00000523689 701 ntBASIC19.38■□□□□ 0.69
COL6A1P12109 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.38■□□□□ 0.69
COL6A1P12109 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A1P12109 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A1P12109 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A1P12109 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
COL6A1P12109 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
COL6A1P12109 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A1P12109 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL6A1P12109 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A1P12109 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A1P12109 LINC00982-205ENST00000420957 435 ntBASIC19.37■□□□□ 0.69
COL6A1P12109 AL512356.2-201ENST00000546955 174 ntBASIC19.37■□□□□ 0.69
COL6A1P12109 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A1P12109 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A1P12109 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A1P12109 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
COL6A1P12109 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A1P12109 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A1P12109 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL6A1P12109 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
COL6A1P12109 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A1P12109 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A1P12109 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL6A1P12109 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
COL6A1P12109 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A1P12109 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL6A1P12109 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A1P12109 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 BASP1P1-201ENST00000430708 665 ntBASIC19.36■□□□□ 0.69
COL6A1P12109 TSPY16P-201ENST00000449843 468 ntBASIC19.36■□□□□ 0.69
COL6A1P12109 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A1P12109 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A1P12109 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A1P12109 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A1P12109 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A1P12109 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL6A1P12109 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms