Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SLC25A1P2-201ENST00000430693 912 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 CCR12P-201ENST00000446203 998 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TSPY17P-201ENST00000450329 467 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AP005242.2-201ENST00000580065 1175 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AC233702.5-201ENST00000584107 538 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 UNC93B2-201ENST00000285383 730 ntBASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 CR769767.2-201ENST00000622735 460 ntBASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CHMP1AQ9HD42 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.27■□□□□ 0.03
CHMP1AQ9HD42 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AC126755.1-201ENST00000525846 6405 ntBASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AC093010.1-201ENST00000473625 1624 ntBASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms