Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.15■□□□□ 0.98
Nkx6-1Q99MA9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.15■□□□□ 0.98
Nkx6-1Q99MA9 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC21.14■□□□□ 0.98
Nkx6-1Q99MA9 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.14■□□□□ 0.97
Nkx6-1Q99MA9 Gm10232-201ENSMUST00000089221 720 ntBASIC21.14■□□□□ 0.97
Nkx6-1Q99MA9 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx6-1Q99MA9 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx6-1Q99MA9 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.13■□□□□ 0.97
Nkx6-1Q99MA9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx6-1Q99MA9 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx6-1Q99MA9 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx6-1Q99MA9 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx6-1Q99MA9 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx6-1Q99MA9 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx6-1Q99MA9 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.1■□□□□ 0.97
Nkx6-1Q99MA9 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx6-1Q99MA9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
Nkx6-1Q99MA9 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx6-1Q99MA9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Nkx6-1Q99MA9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx6-1Q99MA9 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx6-1Q99MA9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx6-1Q99MA9 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx6-1Q99MA9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx6-1Q99MA9 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx6-1Q99MA9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Nkx6-1Q99MA9 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC21.07■□□□□ 0.96
Nkx6-1Q99MA9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Nkx6-1Q99MA9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx6-1Q99MA9 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx6-1Q99MA9 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx6-1Q99MA9 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Nkx6-1Q99MA9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx6-1Q99MA9 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx6-1Q99MA9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Nkx6-1Q99MA9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx6-1Q99MA9 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Nkx6-1Q99MA9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Nkx6-1Q99MA9 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx6-1Q99MA9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx6-1Q99MA9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx6-1Q99MA9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx6-1Q99MA9 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Nkx6-1Q99MA9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nkx6-1Q99MA9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Nkx6-1Q99MA9 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21■□□□□ 0.95
Nkx6-1Q99MA9 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx6-1Q99MA9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nkx6-1Q99MA9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.99■□□□□ 0.95
Nkx6-1Q99MA9 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nkx6-1Q99MA9 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nkx6-1Q99MA9 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nkx6-1Q99MA9 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nkx6-1Q99MA9 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nkx6-1Q99MA9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nkx6-1Q99MA9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Nkx6-1Q99MA9 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.97■□□□□ 0.95
Nkx6-1Q99MA9 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nkx6-1Q99MA9 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx6-1Q99MA9 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx6-1Q99MA9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx6-1Q99MA9 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx6-1Q99MA9 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.96■□□□□ 0.95
Nkx6-1Q99MA9 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nkx6-1Q99MA9 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms