Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 HTR5BP-201ENST00000430851 1154 ntBASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 MAL2-202ENST00000531508 892 ntTSL 3 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 AC018845.2-201ENST00000568326 409 ntBASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 STK25P1-201ENST00000585406 838 ntBASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 AC010654.1-201ENST00000615722 808 ntBASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 GPR89P-201ENST00000407924 1495 ntBASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CDK11AQ9UQ88 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 AL513190.1-201ENST00000621254 727 ntBASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CDK11AQ9UQ88 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 METTL21AP1-201ENST00000438852 635 ntBASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 CD63-210ENST00000550776 870 ntTSL 5 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 AC109462.3-201ENST00000573934 613 ntBASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CDK11AQ9UQ88 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 PC-208ENST00000529047 1607 ntTSL 3 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 RIN3-211ENST00000557762 517 ntTSL 3 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 BX276092.7-203ENST00000637198 1536 ntBASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC27.34■■□□□ 1.97
CDK11AQ9UQ88 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 AL096828.2-201ENST00000567259 1965 ntBASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 MRPL20P1-201ENST00000400819 433 ntBASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 IGLL3P-201ENST00000412472 434 ntBASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 STK19B-204ENST00000512515 211 ntBASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CDK11AQ9UQ88 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
CDK11AQ9UQ88 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC27.33■■□□□ 1.96
CDK11AQ9UQ88 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.96
CDK11AQ9UQ88 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 ELL2P1-201ENST00000413990 1906 ntBASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 CROCCP3-202ENST00000420820 1947 ntBASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 DDX43P3-201ENST00000441064 443 ntBASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
CDK11AQ9UQ88 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms