Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL691432.3-201ENST00000621860 400 ntBASIC20.45■□□□□ 0.86
SMARCA1P28370 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.45■□□□□ 0.86
SMARCA1P28370 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SMARCA1P28370 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.45■□□□□ 0.86
SMARCA1P28370 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 PMPCAP1-201ENST00000508114 1576 ntBASIC20.45■□□□□ 0.86
SMARCA1P28370 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.45■□□□□ 0.86
SMARCA1P28370 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SMARCA1P28370 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 AKR1C7P-201ENST00000305623 895 ntBASIC20.44■□□□□ 0.86
SMARCA1P28370 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.44■□□□□ 0.86
SMARCA1P28370 RN7SL510P-201ENST00000581311 263 ntBASIC20.44■□□□□ 0.86
SMARCA1P28370 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.44■□□□□ 0.86
SMARCA1P28370 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.44■□□□□ 0.86
SMARCA1P28370 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCA1P28370 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMARCA1P28370 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCA1P28370 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
SMARCA1P28370 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCA1P28370 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 REXO1L11P-201ENST00000620964 1927 ntBASIC20.43■□□□□ 0.86
SMARCA1P28370 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 SAPCD2P3-201ENST00000455031 850 ntBASIC20.43■□□□□ 0.86
SMARCA1P28370 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.43■□□□□ 0.86
SMARCA1P28370 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.43■□□□□ 0.86
SMARCA1P28370 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SMARCA1P28370 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCA1P28370 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCA1P28370 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCA1P28370 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.42■□□□□ 0.86
SMARCA1P28370 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.42■□□□□ 0.86
SMARCA1P28370 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.42■□□□□ 0.86
SMARCA1P28370 AP001269.4-201ENST00000609611 512 ntBASIC20.42■□□□□ 0.86
SMARCA1P28370 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCA1P28370 AL355877.3-201ENST00000622820 899 ntBASIC20.42■□□□□ 0.86
SMARCA1P28370 NOC2LP2-201ENST00000407594 1944 ntBASIC20.42■□□□□ 0.86
SMARCA1P28370 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SMARCA1P28370 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCA1P28370 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCA1P28370 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCA1P28370 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 AC004870.1-201ENST00000315132 882 ntBASIC20.41■□□□□ 0.86
SMARCA1P28370 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms