Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AC026120.1-201ENST00000611536 926 ntBASIC26.55■■□□□ 1.84
RAPGEF3O95398 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC26.55■■□□□ 1.84
RAPGEF3O95398 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC26.55■■□□□ 1.84
RAPGEF3O95398 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
RAPGEF3O95398 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 FAM207CP-201ENST00000443486 507 ntBASIC26.54■■□□□ 1.84
RAPGEF3O95398 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 AC112191.1-201ENST00000523689 701 ntBASIC26.54■■□□□ 1.84
RAPGEF3O95398 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 HFE2-206ENST00000634927 506 ntTSL 4 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 TUBB3P1-201ENST00000405796 1332 ntBASIC26.54■■□□□ 1.84
RAPGEF3O95398 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC26.54■■□□□ 1.84
RAPGEF3O95398 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RAPGEF3O95398 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 AL355306.1-201ENST00000415580 579 ntBASIC26.53■■□□□ 1.84
RAPGEF3O95398 HNRNPA1P40-201ENST00000426371 1278 ntBASIC26.53■■□□□ 1.84
RAPGEF3O95398 FAM185BP-201ENST00000443595 716 ntBASIC26.53■■□□□ 1.84
RAPGEF3O95398 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 AL512356.2-201ENST00000546955 174 ntBASIC26.53■■□□□ 1.84
RAPGEF3O95398 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 AC099522.2-201ENST00000607001 744 ntBASIC26.53■■□□□ 1.84
RAPGEF3O95398 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RAPGEF3O95398 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
RAPGEF3O95398 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 AC005237.2-201ENST00000434368 219 ntBASIC26.52■■□□□ 1.84
RAPGEF3O95398 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 AC069335.1-201ENST00000489972 472 ntBASIC26.52■■□□□ 1.84
RAPGEF3O95398 NOP2-220ENST00000545915 630 ntTSL 2 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 AC018445.3-201ENST00000624177 1945 ntBASIC26.52■■□□□ 1.84
RAPGEF3O95398 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
RAPGEF3O95398 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC26.52■■□□□ 1.84
RAPGEF3O95398 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC26.51■■□□□ 1.84
RAPGEF3O95398 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
RAPGEF3O95398 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC26.51■■□□□ 1.84
RAPGEF3O95398 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
RAPGEF3O95398 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 GMCL1P1-201ENST00000463439 1581 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 FO538757.1-201ENST00000623083 1397 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
RAPGEF3O95398 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
RAPGEF3O95398 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
RAPGEF3O95398 LINC00982-205ENST00000420957 435 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 GPS2P2-201ENST00000430745 888 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 KLF2P3-201ENST00000451977 1087 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC26.51■■□□□ 1.83
RAPGEF3O95398 ACTL9-202ENST00000612068 1252 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
RAPGEF3O95398 PI4KAP1-204ENST00000612579 1703 ntBASIC26.51■■□□□ 1.83
RAPGEF3O95398 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
RAPGEF3O95398 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms