Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 AL354751.1-201ENST00000412768 1863 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 KRT18P13-201ENST00000400056 1290 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 SCARNA2-201ENST00000458748 420 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 AC106730.1-201ENST00000566722 1090 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 AC011467.2-201ENST00000598425 242 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 AC125634.1-201ENST00000438758 1403 ntBASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TM9SF3Q9HD45 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 AC005332.8-201ENST00000622750 2735 ntBASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 AL499627.1-201ENST00000569373 2188 ntBASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 HNRNPDP1-201ENST00000439535 754 ntBASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 AC139530.3-201ENST00000620344 690 ntBASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TM9SF3Q9HD45 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 RPL13AP23-201ENST00000480739 586 ntBASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 LINC01126-201ENST00000623515 1646 ntBASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TM9SF3Q9HD45 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TM9SF3Q9HD45 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms