Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AC133963.1-201ENST00000504166 1679 ntBASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 MIR564-202ENST00000385049 94 ntBASIC13.1□□□□□ -0.31
SMKR1H3BMG3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CDCA4P2-201ENST00000441182 718 ntBASIC13.1□□□□□ -0.31
SMKR1H3BMG3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AC083906.2-201ENST00000511578 360 ntBASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AGGF1P2-201ENST00000426656 2106 ntBASIC13.1□□□□□ -0.31
SMKR1H3BMG3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SMKR1H3BMG3 AL162727.3-201ENST00000635661 2787 ntBASIC13.09□□□□□ -0.31
SMKR1H3BMG3 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 DOC2GP-204ENST00000639052 2548 ntBASIC13.09□□□□□ -0.31
SMKR1H3BMG3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.09□□□□□ -0.31
SMKR1H3BMG3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms