Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
CDK11AQ9UQ88 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 AC006504.4-201ENST00000592118 1568 ntBASIC27.52■■■□□ 2
CDK11AQ9UQ88 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CDK11AQ9UQ88 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC27.52■■■□□ 2
CDK11AQ9UQ88 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC27.51■■■□□ 2
CDK11AQ9UQ88 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC27.51■■■□□ 2
CDK11AQ9UQ88 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC27.51■■■□□ 2
CDK11AQ9UQ88 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■■□□ 2
CDK11AQ9UQ88 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 SIRPAP1-201ENST00000448467 1770 ntBASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
CDK11AQ9UQ88 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 AC003669.1-201ENST00000334569 611 ntBASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 PRSS29P-201ENST00000440800 595 ntBASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 IGHV3-65-201ENST00000523210 341 ntBASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 AC008667.4-201ENST00000607370 168 ntBASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 AC073592.3-201ENST00000625118 1834 ntBASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
CDK11AQ9UQ88 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 VN2R19P-201ENST00000442399 1052 ntBASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 AC108073.2-201ENST00000464002 357 ntBASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 AC148477.5-201ENST00000625164 1645 ntBASIC27.49■■□□□ 1.99
CDK11AQ9UQ88 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 SIGLEC30P-201ENST00000455569 941 ntBASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC27.48■■□□□ 1.99
CDK11AQ9UQ88 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 KLF4P1-201ENST00000412782 1185 ntBASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC27.47■■□□□ 1.99
CDK11AQ9UQ88 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms