Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 FAM87A-204ENST00000613235 858 ntBASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 MIR149-201ENST00000384879 89 ntBASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 AC009065.1-201ENST00000564055 1225 ntBASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 AC009102.3-201ENST00000623118 1491 ntBASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 KRT18P22-201ENST00000402024 1347 ntBASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC39Q9UFE4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 AL023806.1-201ENST00000603994 1649 ntBASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 AC104390.1-201ENST00000555663 520 ntBASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 GMCL1P1-201ENST00000463439 1581 ntBASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC39Q9UFE4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms