Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 FAM58CP-201ENST00000435741 640 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 CNN2P2-201ENST00000443536 909 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 CNN2P3-201ENST00000450201 906 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 AL353135.1-201ENST00000606729 504 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 AL136317.3-201ENST00000618497 906 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 AC009093.7-201ENST00000623853 1223 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 AC010507.1-201ENST00000633895 436 ntBASIC17.44■□□□□ 0.38
CFAP54Q96N23 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 AC003669.1-201ENST00000334569 611 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 RHOQP3-201ENST00000437982 621 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 BCAR1-209ENST00000546196 1340 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 MRPS18AP1-201ENST00000414458 589 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 AC010654.1-201ENST00000615722 808 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 PGM5P2-202ENST00000637225 1043 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CFAP54Q96N23 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CFAP54Q96N23 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.43■□□□□ 0.38
CFAP54Q96N23 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 AC079776.1-201ENST00000401540 1152 ntBASIC17.42■□□□□ 0.38
CFAP54Q96N23 PIN1P1-201ENST00000412108 996 ntBASIC17.42■□□□□ 0.38
CFAP54Q96N23 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.42■□□□□ 0.38
CFAP54Q96N23 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CFAP54Q96N23 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.41■□□□□ 0.38
CFAP54Q96N23 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.41■□□□□ 0.38
CFAP54Q96N23 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.41■□□□□ 0.38
CFAP54Q96N23 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CFAP54Q96N23 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CFAP54Q96N23 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CFAP54Q96N23 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms