Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.13■□□□□ 0.33
MSX2P35548 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.13■□□□□ 0.33
MSX2P35548 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSX2P35548 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
MSX2P35548 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MSX2P35548 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 AP002982.1-201ENST00000492365 877 ntBASIC17.12■□□□□ 0.33
MSX2P35548 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.12■□□□□ 0.33
MSX2P35548 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.12■□□□□ 0.33
MSX2P35548 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 AL109923.1-201ENST00000618799 583 ntBASIC17.12■□□□□ 0.33
MSX2P35548 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.12■□□□□ 0.33
MSX2P35548 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX2P35548 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX2P35548 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSX2P35548 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
MSX2P35548 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX2P35548 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 LINC02199-201ENST00000506655 2702 ntBASIC17.11■□□□□ 0.33
MSX2P35548 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.11■□□□□ 0.33
MSX2P35548 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
MSX2P35548 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.11■□□□□ 0.33
MSX2P35548 KSR1P1-201ENST00000446298 240 ntBASIC17.11■□□□□ 0.33
MSX2P35548 AP003097.1-201ENST00000530657 1135 ntBASIC17.11■□□□□ 0.33
MSX2P35548 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
MSX2P35548 CR392000.1-201ENST00000624770 1228 ntBASIC17.11■□□□□ 0.33
MSX2P35548 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MSX2P35548 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX2P35548 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.11■□□□□ 0.33
MSX2P35548 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX2P35548 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.1■□□□□ 0.33
MSX2P35548 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
MSX2P35548 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms