Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SCN4AP35499 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SCN4AP35499 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN4AP35499 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN4AP35499 PTCHD3P3-201ENST00000403073 906 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 KRT8P48-201ENST00000515599 1220 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.99■□□□□ 0.95
SCN4AP35499 AC019129.2-201ENST00000609837 1235 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN4AP35499 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN4AP35499 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN4AP35499 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 AC073130.3-201ENST00000624389 2278 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN4AP35499 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SCN4AP35499 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.99■□□□□ 0.95
SCN4AP35499 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN4AP35499 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.99■□□□□ 0.95
SCN4AP35499 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN4AP35499 AC140878.1-201ENST00000565277 250 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN4AP35499 AL158211.5-201ENST00000623583 2518 ntBASIC20.99■□□□□ 0.95
SCN4AP35499 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SCN4AP35499 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 AL161938.1-201ENST00000569833 2180 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.98■□□□□ 0.95
SCN4AP35499 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SCN4AP35499 BASP1P1-201ENST00000430708 665 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.98■□□□□ 0.95
SCN4AP35499 AL513480.1-201ENST00000451731 511 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 INGX-202ENST00000489074 768 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN4AP35499 STK19B-204ENST00000512515 211 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 AP005018.1-201ENST00000525475 301 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 SLC25A39P2-201ENST00000537614 270 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.98■□□□□ 0.95
SCN4AP35499 AC026120.1-201ENST00000611536 926 ntBASIC20.98■□□□□ 0.95
SCN4AP35499 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN4AP35499 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
SCN4AP35499 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
SCN4AP35499 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN4AP35499 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 COX5BP2-201ENST00000392354 334 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
SCN4AP35499 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.97■□□□□ 0.95
SCN4AP35499 ACTG1P4-201ENST00000425123 1122 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN4AP35499 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.97■□□□□ 0.95
SCN4AP35499 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.97■□□□□ 0.95
SCN4AP35499 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 AL032819.2-201ENST00000624543 2162 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 AC018445.3-201ENST00000624177 1945 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
SCN4AP35499 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SCN4AP35499 AC093010.1-201ENST00000473625 1624 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 AL355306.1-201ENST00000415580 579 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 AC107890.1-201ENST00000422478 521 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.97■□□□□ 0.95
SCN4AP35499 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 MIR6752-201ENST00000618442 71 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN4AP35499 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN4AP35499 GMCL1P1-201ENST00000463439 1581 ntBASIC20.97■□□□□ 0.95
SCN4AP35499 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms