Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.86■□□□□ 0.61
BDNFP23560 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.86■□□□□ 0.61
BDNFP23560 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.86■□□□□ 0.61
BDNFP23560 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.86■□□□□ 0.61
BDNFP23560 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
BDNFP23560 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.86■□□□□ 0.61
BDNFP23560 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.86■□□□□ 0.61
BDNFP23560 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
BDNFP23560 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
BDNFP23560 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
BDNFP23560 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BDNFP23560 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
BDNFP23560 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.85■□□□□ 0.61
BDNFP23560 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 AC007967.3-201ENST00000434308 558 ntBASIC18.85■□□□□ 0.61
BDNFP23560 SAPCD2P3-201ENST00000455031 850 ntBASIC18.85■□□□□ 0.61
BDNFP23560 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 AF238378.1-201ENST00000526806 358 ntBASIC18.85■□□□□ 0.61
BDNFP23560 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.85■□□□□ 0.61
BDNFP23560 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
BDNFP23560 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BDNFP23560 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
BDNFP23560 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 AC097374.2-201ENST00000618617 1306 ntBASIC18.84■□□□□ 0.61
BDNFP23560 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.84■□□□□ 0.61
BDNFP23560 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.84■□□□□ 0.61
BDNFP23560 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.84■□□□□ 0.61
BDNFP23560 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.84■□□□□ 0.61
BDNFP23560 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.84■□□□□ 0.61
BDNFP23560 AC104692.2-201ENST00000603054 253 ntBASIC18.84■□□□□ 0.61
BDNFP23560 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
BDNFP23560 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.84■□□□□ 0.61
BDNFP23560 AC010460.3-201ENST00000511359 1579 ntBASIC18.84■□□□□ 0.61
BDNFP23560 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
BDNFP23560 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BDNFP23560 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms