Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FUCA2-202ENST00000367585 646 ntTSL 422.87■■□□□ 1.252e-6■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.57■■□□□ 1.22e-6■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-210ENST00000620462 1594 ntTSL 522.41■■□□□ 1.182e-6■□□□□ 9.8
DDX55Q8NHQ9 GUK1-239ENST00000498115 796 ntTSL 522.13■■□□□ 1.133e-12■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-206ENST00000615744 1379 ntTSL 322.12■■□□□ 1.132e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-207ENST00000466855 1894 ntTSL 522.09■■□□□ 1.135e-7■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-206ENST00000530791 837 ntTSL 221.99■■□□□ 1.112e-6■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.62■■□□□ 1.052e-6■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.052e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-203ENST00000459800 449 ntTSL 221.55■■□□□ 1.045e-7■□□□□ 9.8
DDX55Q8NHQ9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.032e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-209ENST00000469237 1904 ntTSL 521.47■■□□□ 1.035e-7■□□□□ 9.8
DDX55Q8NHQ9 PRMT1-209ENST00000527866 968 ntTSL 221.32■■□□□ 17e-7■□□□□ 9.8
DDX55Q8NHQ9 GUK1-222ENST00000477206 589 ntTSL 221.23■□□□□ 0.993e-12■□□□□ 9.8
DDX55Q8NHQ9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.16■□□□□ 0.985e-7■□□□□ 9.8
DDX55Q8NHQ9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.972e-34■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-204ENST00000575894 1728 nt20.78■□□□□ 0.922e-6■□□□□ 9.8
DDX55Q8NHQ9 GUK1-224ENST00000480056 544 ntTSL 320.76■□□□□ 0.913e-12■□□□□ 9.8
DDX55Q8NHQ9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.852e-6■□□□□ 9.8
DDX55Q8NHQ9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.742e-6■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC19.34■□□□□ 0.692e-6■□□□□ 9.8
DDX55Q8NHQ9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.662e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-204ENST00000460980 1521 ntTSL 518.84■□□□□ 0.615e-7■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-205ENST00000611328 628 ntTSL 318.65■□□□□ 0.582e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-214ENST00000490413 1370 ntTSL 218.53■□□□□ 0.562e-6■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-209ENST00000619674 2306 ntTSL 218.46■□□□□ 0.552e-6■□□□□ 9.8
DDX55Q8NHQ9 GUK1-217ENST00000465025 783 ntTSL 218.25■□□□□ 0.513e-12■□□□□ 9.8
DDX55Q8NHQ9 GTF3C5-205ENST00000435745 736 ntTSL 418.21■□□□□ 0.512e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-208ENST00000461888 2277 ntTSL 517.81■□□□□ 0.442e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-207ENST00000587010 607 ntTSL 317.66■□□□□ 0.422e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-210ENST00000473382 573 ntTSL 317.61■□□□□ 0.412e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-212ENST00000476033 945 ntTSL 217.22■□□□□ 0.352e-6■□□□□ 9.8
DDX55Q8NHQ9 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.77■□□□□ 0.279e-57■□□□□ 9.8
DDX55Q8NHQ9 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.279e-57■□□□□ 9.8
DDX55Q8NHQ9 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.262e-6■□□□□ 9.8
DDX55Q8NHQ9 ARL2-205ENST00000531533 281 ntTSL 216.64■□□□□ 0.252e-6■□□□□ 9.8
DDX55Q8NHQ9 DHRS3-202ENST00000464917 539 ntTSL 316.61■□□□□ 0.252e-6■□□□□ 9.8
DDX55Q8NHQ9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.222e-6■□□□□ 9.8
DDX55Q8NHQ9 GTF3C5-208ENST00000461871 623 ntTSL 316.14■□□□□ 0.172e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-216ENST00000495374 705 ntTSL 215.84■□□□□ 0.132e-6■□□□□ 9.8
DDX55Q8NHQ9 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.122e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-208ENST00000467237 3011 ntTSL 1 (best)15.7■□□□□ 0.15e-7■□□□□ 9.8
DDX55Q8NHQ9 USP36-214ENST00000589225 5885 ntTSL 1 (best)15.49■□□□□ 0.072e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-221ENST00000592231 2479 ntTSL 215.35■□□□□ 0.052e-6■□□□□ 9.8
DDX55Q8NHQ9 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.012e-6■□□□□ 9.8
DDX55Q8NHQ9 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC14.85□□□□□ -0.032e-6■□□□□ 9.8
DDX55Q8NHQ9 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC14.79□□□□□ -0.042e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.052e-6■□□□□ 9.8
DDX55Q8NHQ9 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC14.48□□□□□ -0.092e-6■□□□□ 9.8
DDX55Q8NHQ9 STK11-202ENST00000585465 3554 ntTSL 514.34□□□□□ -0.112e-6■□□□□ 9.8
DDX55Q8NHQ9 GTF3C5-206ENST00000439697 823 ntTSL 314.16□□□□□ -0.142e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-223ENST00000592326 406 ntTSL 514.14□□□□□ -0.152e-6■□□□□ 9.8
DDX55Q8NHQ9 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC14.1□□□□□ -0.152e-6■□□□□ 9.8
DDX55Q8NHQ9 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.192e-6■□□□□ 9.8
DDX55Q8NHQ9 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC13.65□□□□□ -0.222e-6■□□□□ 9.8
DDX55Q8NHQ9 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC13.46□□□□□ -0.252e-6■□□□□ 9.8
DDX55Q8NHQ9 CHD3-216ENST00000573936 749 ntTSL 313.25□□□□□ -0.292e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-215ENST00000494319 720 ntTSL 212.97□□□□□ -0.332e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-204ENST00000413052 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.342e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-219ENST00000591052 427 ntTSL 312.57□□□□□ -0.42e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-213ENST00000477163 513 ntTSL 312.43□□□□□ -0.422e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-203ENST00000369645 3552 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.442e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-208ENST00000587379 606 ntTSL 312.01□□□□□ -0.492e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-202ENST00000368073 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.552e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-210ENST00000586714 594 ntTSL 1 (best)11.18□□□□□ -0.622e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-215ENST00000588897 2283 ntTSL 210.88□□□□□ -0.672e-6■□□□□ 9.8
DDX55Q8NHQ9 USP36-211ENST00000588130 602 ntTSL 210.74□□□□□ -0.692e-6■□□□□ 9.8
DDX55Q8NHQ9 SCML2-201ENST00000251900 4200 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.72e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-205ENST00000585893 2394 ntTSL 2 BASIC10.57□□□□□ -0.722e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-217ENST00000590078 2392 ntTSL 2 BASIC10.57□□□□□ -0.722e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-201ENST00000357443 3383 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.742e-6■□□□□ 9.8
DDX55Q8NHQ9 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.772e-34■□□□□ 9.8
DDX55Q8NHQ9 FUCA2-203ENST00000451668 737 ntTSL 210.14□□□□□ -0.792e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-202ENST00000369644 4100 ntTSL 1 (best) BASIC10.06□□□□□ -0.82e-6■□□□□ 9.8
DDX55Q8NHQ9 MTF2-214ENST00000545708 4046 ntTSL 2 BASIC9.75□□□□□ -0.854e-6■□□□□ 9.8
DDX55Q8NHQ9 MTF2-213ENST00000540243 3845 ntTSL 2 BASIC9.73□□□□□ -0.854e-6■□□□□ 9.8
DDX55Q8NHQ9 MTF2-201ENST00000370298 4125 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.874e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-217ENST00000496577 4312 ntTSL 29.54□□□□□ -0.882e-6■□□□□ 9.8
DDX55Q8NHQ9 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.882e-6■□□□□ 9.8
DDX55Q8NHQ9 MOV10-206ENST00000468624 4689 ntTSL 59.4□□□□□ -0.92e-6■□□□□ 9.8
DDX55Q8NHQ9 PTTG1-204ENST00000519287 670 ntTSL 59.21□□□□□ -0.942e-34■□□□□ 9.8
DDX55Q8NHQ9 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC8.45□□□□□ -1.062e-6■□□□□ 9.8
DDX55Q8NHQ9 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC8.04□□□□□ -1.122e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.152e-6■□□□□ 9.8
DDX55Q8NHQ9 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.212e-6■□□□□ 9.8
DDX55Q8NHQ9 SCML2-204ENST00000491988 807 ntTSL 26.84□□□□□ -1.312e-6■□□□□ 9.8
DDX55Q8NHQ9 SCML2-203ENST00000420857 2435 ntTSL 26□□□□□ -1.452e-6■□□□□ 9.8
DDX55Q8NHQ9 NCKAP1-204ENST00000477988 612 ntTSL 24.7□□□□□ -1.662e-6■□□□□ 9.8
DDX55Q8NHQ9 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.356e-8■□□□□ 9.8
DDX55Q8NHQ9 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.256e-8■□□□□ 9.8
DDX55Q8NHQ9 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.331e-29■□□□□ 9.8
DDX55Q8NHQ9 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC9.89□□□□□ -0.831e-29■□□□□ 9.8
DDX55Q8NHQ9 SPTBN1-204ENST00000467371 3332 ntTSL 27.58□□□□□ -1.21e-29■□□□□ 9.8
DDX55Q8NHQ9 CARHSP1-215ENST00000570125 681 ntTSL 434.64■■■■□ 3.141e-6■□□□□ 9.7
DDX55Q8NHQ9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.621e-6■□□□□ 9.7
DDX55Q8NHQ9 SSUH2-205ENST00000420394 1634 ntTSL 1 (best)22.49■■□□□ 1.191e-6■□□□□ 9.7
DDX55Q8NHQ9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.791e-6■□□□□ 9.7
DDX55Q8NHQ9 CARHSP1-211ENST00000568117 521 ntTSL 317.57■□□□□ 0.41e-6■□□□□ 9.7
DDX55Q8NHQ9 CARHSP1-210ENST00000567908 565 ntTSL 217.16■□□□□ 0.341e-6■□□□□ 9.7
DDX55Q8NHQ9 CARHSP1-207ENST00000565287 556 ntTSL 316.74■□□□□ 0.271e-6■□□□□ 9.7
Retrieved 100 of 15,504 protein–RNA pairs in 126.6 ms